Kevin Moon

Publications | Journal Articles

Academic Journal

• Moon, K., van Dijk, D., Wang, Z., Gigante, S., Burkhardt, D., Chen, W., Yim, K., van den Elzen, A., Hirn, M., Coifman, R., Ivanova, N., Wolf, G., Krishnaswamy, S., (2019). Visualizing Structure and Transitions in High-Dimensional Biological Data. Nature Biotechnology, 37:12, 1482-1492.
• Brunet-Ratnasingham, E., Morin, S., Randolph, H.E, Labrecque, M., Bélair, J., Lima-Barbosa, R., Pagliuzza, A., Marchitto, L., Hultström, M., Niessl, J., Cloutier, R., Sreng Flores, A.M, Brassard, N., Benlarbi, M., Prévost, J., Ding, S., Anand, S.P, Sannier, G., Marks, A., Wågsäter, D., Bareke, E., Zeberg, H., Lipcsey, M., Frithiof, R., Larsson, A., Zhou, S., Nakanishi, T., Morrison, D., Vezina, D., Bourassa, C., Gendron-Lepage, G., Medjahed, H., Point, F., Richard, J., Larochelle, C., Prat, A., Cunningham, J.L, Arbour, N., Durand, M., Richards, J.B, Moon, K., Chomont, N., Finzi, A., Tétreault, M., Barreiro, L., Wolf, G., Kaufmann, D.E, (2024). Sustained IFN signaling is associated with delayed development of SARS-CoV-2-specific immunity. Nature Communications, 15:1, doi: 10.1038/s41467-024-48556-y
• Rhodes, J., Cutler, A., Moon, K., (2023). Geometry- and accuracy-preserving random forest proximities. IEEE Transactions on Pattern Analysis and Machine Intelligence, 45:9, 10947 - 10959.
• Duque, A., Morin, S., Wolf, G., Moon, K., (2022). Geometry regularized autoencoders. IEEE Transactions on Pattern Analysis and Machine Intelligence, 45:6, 7381 - 7394.
• Moon, K., Sricharan, K., Hero, A., (2021). Ensemble Estimation of Generalized Mutual Information with Applications to Genomics. IEEE Transactions on Information Theory, 67:9, 5963-5996.
• Moyle, M., Barnes, K., Kuchroo, M., Gonopolskiy, A., Duncan, L., Sengupta, T., Shao, L., Guo, M., Santella, A., Christensen, R., Kumar, A., Wu, Y., Moon, K., Wolf, G., Krishnaswamy, S., Bao, Z., Shroff, H., Mohler, W., Colon-Ramos, D., (2021). Structural and developmental principles of neuropil assembly in C. elegans. Nature, 591, 99–104.
• Zhang, W., Rhodes, J., Moon, K., Knudsen, B., Nokolova, L., Zhou, A., (2020). Imaging of PD-L1 in single cancer cells by SERS-based hyperspectral analysis. Biomedical Optics Express, 11:11, 6197-6210.
• Zhang, W., Rhodes, J., Garg, A., Takemoto, J.Y, Qi, X., Harihar, S., Chang, C.T, Moon, K., Zhou, A., (2020). Label-free Discrimination and Quantitative Analysis of Oxidative Stress Induced Cytotoxicity and Potential Protection of Antioxidants Using Raman Spectroscopy and Machine Learning. Analytica Chimica Acta, 1128, 221-230.
• Moon, K., (2020). Single cell immune profiling of dengue virus patients reveals intact immune responses to Zika virus with enrichment of innate immune signatures. PLOS Neglected Tropical Diseases, 14:3, e0008112. doi: 10.1371/journal.pntd.0008112
• Yasaei Sekeh, S., Noshad, M., Moon, K., Hero, A.O, (2019). Convergence Rates for Empirical Estimation of Binary Classification Bounds. Entropy, 21:12, 1144.
• Amodio, M., van Dijk, D., Srinivasan, K., Chen, W., Mohsen, H., Moon, K., Campbell, A., Zhao, Y., Wang, X., Venkataswamy, M., Desai, A., V, R., Kumar, P., Montgomery, R., Wolf, G., Krishnaswamy, S., (2019). Exploring single-cell data with deep multitasking neural networks. Nature Methods, 16, 1139-1145.
• Moon, K., (2019). Dissecting alterations in human CD8+ T cells with aging by high-dimensional single cell mass cytometry. Clinical Immunology, 200, 24-30. doi: 10.1016/j.clim.2019.01.005
• Moon, K., Sricharan, K., Greenewald, K., Hero, A., (2018). Ensemble Estimation of Information Divergence. Entropy, 20:8, 560.
• Van Dijk, D., Sharma, R., Nainys, J., Yim, K., Kathail, P., Carr, A., Burdziak, C., Moon, K., Chaffer, C.L, Pattabiraman, D., Bierie, B., Mazutis, L., Wolf, G., Krishnaswamy, S., Pe'er, D., (2018). Recovering Gene Interactions from Single-Cell Data Using Data Diffusion. Cell, 174:3, 716-729.
• Moon, K., Stanley, J., Burkhardt, D., van Dijk, D., Wolf, G., Krishnaswamy, S., (2018). Manifold Learning-based Methods for Analyzing Single-Cell RNA-Sequencing Data. Current Opinion in Systems Biology, 7, 36-46.
• Moon, K., Li, J.J, Delouille, V., De Visscher, R., Watson, F., Hero, III, A.O, (2016). Image patch analysis of sunspots and active regions. I. Intrinsic dimension and correlation analysis. Journal of Space Weather and Space Climate, 6, A2.
• Moon, K., Delouille, ., Li, J., De Visscher, R., Watson, F., Hero, III, A.O, (2016). Image patch analysis of sunspots and active regions. II. Clustering via matrix factorization. Journal of Space Weather and Space Climate, 6, A3.

An asterisk (*) at the end of a publication indicates that it has not been peer-reviewed.

Publications | Technical Reports

Research Reports

An asterisk (*) at the end of a publication indicates that it has not been peer-reviewed.

Publications | Other

An asterisk (*) at the end of a publication indicates that it has not been peer-reviewed.